Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015842356.1_cds_XP_016508368.1_21396
CDS Infomation

[gene=LOC107825949] [db_xref=GeneID:107825949] [protein=probable chlorophyll(ide) b reductase NYC1, chloroplastic] [protein_id=XP_016508368.1] [location=join(18496..18831,19063..19141,19243..19378,19802..19876,19954..20149,20308..20376,21002..21141,21269..21391,22050..22242,22529..22702)] [gbkey=CDS]
Sequence

ATGGCTATGGTGGCAAAGGTACACGTGTCAACACTAGAGTGCCACCACTACTACCACCGT
GGCAGCGGCCACCCACCGCTGTCCGGGAATGTTCTCCCGCGAGTTGTGACTACGTGGGAC
CCTTTGATTGTAAAGGGTCGTCGTAAAATTGTTGTACAACCATGCAGGAGTTTTAAGTCT
GAGGATGAATATGTGAAGGGAAGTGAAATCAAGAAACCTATGAACAAATTGGTTGGAGCT
ATTAGGTCCGCTGTATGGAGTTGTTCGAAGCCAAGTTTGAGAACCGAAAATAAGTTTAGA
GAAGCTATTGAAAAGTTGGAGGAGAGATTGTTCTTGTTGGCGTTATATCTTGGAAGATAT
ATCATTACGATGATGAGCACAGGTGTTGTTATGTTCATTGGATTTCAGTTGTCAGGTGGA
GATAGCCAGATGAATGAGTTGATATGGTATAGCTGGCTTGGGGGAGTTATTATCGGGACT
ATGATAGGCTCCAATTTGGTTTTGGATGAAGTTGCTCGAGCTGGCCCGCGTAATGTCCTT
ATAACTGGAAGTACAAGGGGACTAGGGAAAGCTCTTGCCCGCGAATTTTTACTTTCTGGA
GACCGTGTCGTCGTTACCTCTCGCAGCCCTGAATCTGTCGATTTGACTATCAAGGAGCTT
GAGGAAAATCTGAAGCAAGCTGTAAATGCTGCCACTGGTTCCGCTAGGAAAAAATTGGCT
CATGCAAAAGTTGTTGGTATGGCTTGTGACGTTTCTGAACCTCTTGACGTTAGAAAGCTG
GGCAAGTTTGCTGCAGATGAACTTGGTTACATTGACATTTGGGTAAACAACGCTGGGACA
AACAAAGGTTTTCGACCCTTGCTGCAATTTACCAACGATGATATTCAAGAGATTGTCTCC
ACAAACCTGATTGGTTCTATACTATGCACTAAAGAAGCCATCCAAATCATGAGAACCCAA
AGCAAAGGTGGACATGTCTTTAACATGGATGGTGCAGGTTCTGGAGGATCTAGCACCCCT
CTAACGGCTGTCTATGGATCAACAAAATGTGGTCTCAGGCAGCTTCAATCATCCCTTCTG
AAGGAGTGCAAGCGGTCAAAAGTTGGGGTGCATACAGCCTCTCCGGGCATGGTCTTAACT
GACCTTTTGCTGAGTGGCTCAACTATCCAAAATAGACAAATGTTTAACATCATTTGTGAA
CATCCAGAGACAGTTGCTAGAACACTAGTACCGAGGATGCGGGTTGTAAAAGGAAGTGGA
AGAGCCATCAATTATTTGACTCCGCCAAGGATCTTAATTGCCTTAGTAACCGCATGGTTG
AGACGGGGCCGATGGTTTGATGATCAGGGAAGAGCACTGTATGCTGCAGAGGCAGATCGA
CTCCGTAACTGGGCTGAAAACCGAACACGGTTTTCGTTCACAGATGCCATGGAGATGTAC
ACAGAGAATACTTGGATCTCTGTGTTCTCGCTCTCGGTGGTGTGTGCATTCATCATATTA
TCAAGCACAGGTAGCACATAG

Peptide Sequence

PEP ID

XP_016508368.1
PEP Infomation

PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic [Nicotiana tabacum]
Sequence

MAMVAKVHVSTLECHHYYHRGSGHPPLSGNVLPRVVTTWDPLIVKGRRKIVVQPCRSFKS
EDEYVKGSEIKKPMNKLVGAIRSAVWSCSKPSLRTENKFREAIEKLEERLFLLALYLGRY
IITMMSTGVVMFIGFQLSGGDSQMNELIWYSWLGGVIIGTMIGSNLVLDEVARAGPRNVL
ITGSTRGLGKALAREFLLSGDRVVVTSRSPESVDLTIKELEENLKQAVNAATGSARKKLA
HAKVVGMACDVSEPLDVRKLGKFAADELGYIDIWVNNAGTNKGFRPLLQFTNDDIQEIVS
TNLIGSILCTKEAIQIMRTQSKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQSSLL
KECKRSKVGVHTASPGMVLTDLLLSGSTIQNRQMFNIICEHPETVARTLVPRMRVVKGSG
RAINYLTPPRILIALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRTRFSFTDAMEMY
TENTWISVFSLSVVCAFIILSSTGST

Transcript Sequence

Gene sequence data has not been registered.